Publications

Most recent publications

Antimicrobial Resistance in Class 1 Integron-Positive Shiga Toxin-Producing Escherichia coli Isolated from Cattle, Pigs, Food and Farm Environment.

Colello R, Krüger A, Conza JD, Rossen JWA, Friedrich AW, Gutkind G, Etcheverría AI, Padola NL.

Microorganisms. 2018 Sep 28;6(4). pii: E99. doi: 10.3390/microorganisms6040099.

 

Elucidating vancomycin-resistant Enterococcus faecium outbreaks: the role of clonal spread and movement of mobile genetic elements.

Zhou X, Chlebowicz MA, Bathoorn E, Rosema S, Couto N, Lokate M, Arends JP, Friedrich AW, Rossen JWA.

J Antimicrob Chemother. 2018 Sep 14. doi: 10.1093/jac/dky349. [Epub ahead of print]

 

Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens.

Couto N, Schuele L, Raangs EC, Machado MP, Mendes CI, Jesus TF, Chlebowicz M, Rosema S, Ramirez M, Carriço JA, Autenrieth IB, Friedrich AW, Peter S, Rossen JW.

Sci Rep. 2018 Sep 13;8(1):13767. doi: 10.1038/s41598-018-31873-w.

 

Extended-spectrum beta-lactamase producing Enterobacteriaceae (ESBL-E) isolated from bean sprouts in the Netherlands.

Huizinga P, Schrauwen E, García-Cobos S, Willemsen I, Verhulst C, Friedrich AW, Savelkoul PHM, Rossen JW, Kluytmans J.

PLoS One. 2018 Aug 30;13(8):e0203338. doi: 10.1371/journal.pone.0203338. eCollection 2018.

 

Sonication of heart valves detects more bacteria in infective endocarditis.

Gomes A, van Oosten M, Bijker KLB, Boiten KE, Salomon EN, Rosema S, Rossen JWA, Natour E, Douglas YL, Kampinga GA, van Assen S, Sinha B.

Sci Rep. 2018 Aug 28;8(1):12967. doi: 10.1038/s41598-018-31029-w.

 

Typing and species identification of clinical Klebsiella isolates by Fourier-transform infrared (FTIR) spectroscopy and matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry.

Dinkelacker AG, Vogt S, Oberhettinger P, Mauder N, Rau J, Kostrzewa M, Rossen JWA, Autenrieth IB, Peter S, Liese J.

J Clin Microbiol. 2018 Aug 22. pii: JCM.00843-18. doi: 10.1128/JCM.00843-18. [Epub ahead of print]

 

An ancient family of mobile genomic islands introducing cephalosporinase and carbapenemase genes in Enterobacteriaceae.

Nepal S, Bonn F, Grasso S, Stobernack T, de Jong A, Zhou K, Wedema R, Rosema S, Becher D, Otto A, Rossen JW, van Dijl JM, Bathoorn E.

Virulence. 2018;9(1):1377-1389. doi: 10.1080/21505594.2018.1509666.

 

The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies.

Angers-Loustau A, Petrillo M, Bengtsson-Palme J, Berendonk T, Blais B, Chan KG, Coque TM, Hammer P, Heß S, Kagkli DM, Krumbiegel C, Lanza VF, Madec JY, Naas T, O’Grady J, Paracchini V, Rossen JWA, Ruppé E, Vamathevan J, Venturi V, Van den Eede G.

F1000Res. 2018 Apr 13;7:459. doi: 10.12688/f1000research.14509.1. eCollection 2018.

 

Detection of Legionella Anisa in Water from Hospital Dental Chair Units and Molecular Characterization by Whole-Genome Sequencing.

Fleres G, Couto N, Lokate M, van der Sluis LWM, Ginevra C, Jarraud S, Deurenberg RH, Rossen JW, García-Cobos S, Friedrich AW.

Microorganisms. 2018 Jul 18;6(3). pii: E71. doi: 10.3390/microorganisms6030071.

 

Evaluation of a Culture-Dependent Algorithm and a Molecular Algorithm for Identification of Shigella spp., Escherichia coli, and Enteroinvasive E. coli.

van den Beld MJC, de Boer RF, Reubsaet FAG, Rossen JWA, Zhou K, Kuiling S, Friedrich AW, Kooistra-Smid MAMD.

J Clin Microbiol. 2018 Sep 25;56(10). pii: e00510-18. doi: 10.1128/JCM.00510-18. Print 2018 Oct.

 

Three metronidazole-resistant Prevotella bivia strains harbour a mobile element, encoding a novel nim gene, nimK, and an efflux small MDR transporter.

Veloo ACM, Chlebowicz M, Winter HLJ, Bathoorn D, Rossen JWA.

J Antimicrob Chemother. 2018 Oct 1;73(10):2687-2690. doi: 10.1093/jac/dky236.

 

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